! Floats Input Parameters for the Oyster behavior model.
!
!svn $Id: behavior_oyster.in 889 2018-02-10 03:32:52Z arango $
!========================================================= Hernan G. Arango ===
! Copyright (c) 2002-2019 The ROMS/TOMS Group Diego A. Narvaez !
! Licensed under a MIT/X style license !
! See License_ROMS.txt !
!==============================================================================
! !
! Input parameters can be entered in ANY order, provided that the parameter !
! KEYWORD (usually, upper case) is typed correctly followed by "=" or "==" !
! symbols. Any comment lines are allowed and must begin with an exclamation !
! mark (!) in column one. Comments may appear to the right of a parameter !
! specification to improve documentation. Comments will be ignored during !
! reading. Blank lines are also allowed and ignored. Continuation lines in !
! a parameter specification are allowed and must be preceded by a backslash !
! (\). In some instances, more than one value is required for a parameter. !
! If fewer values are provided, the last value is assigned for the entire !
! parameter array. The multiplication symbol (*), without blank spaces in !
! between, is allowed for a parameter specification. For example, in a two !
! grids nested application: !
! !
! AKT_BAK == 2*1.0d-6 2*5.0d-6 ! m2/s !
! !
! indicates that the first two entries of array AKT_BAK, in fortran column- !
! major order, will have the same value of "1.0d-6" for grid 1, whereas the !
! next two entries will have the same value of "5.0d-6" for grid 2. !
! !
! In multiple levels of nesting and/or multiple connected domains step-ups, !
! "Ngrids" entries are expected for some of these parameters. In such case, !
! the order of the entries for a parameter is extremely important. It must !
! follow the same order (1:Ngrids) as in the state variable declaration. The !
! USER may follow the above guidelines for specifying his/her values. These !
! parameters are marked by "==" plural symbol after the KEYWORD. !
! !
!==============================================================================
!
! Initial planktonic larvae size in terms of length (um).
Larvae_size0 == 50.0d0
! Initial planktonic larvae growth rate (um/day).
Larvae_GR0 == 12.5d0
! Planktonic larvae settlement size (um).
settle_size == 330.0d0
! Initial food supply (constant source) concentration (mg Carbon/l).
food_supply == 4.0d0
! Turbidity effect parameters on planktonic larvae growth
! Following Dekshenieks et al. (1997), the turbidity effect
! (linear or exponential) is defined as:
!
! turbef = m * trub + c, for turbidity < 0.1 g/l
! or
! turbef = b * EXP(-beta*(turb-turb0)), for turbidity > 0.1 g/l
!
turb_ambi == 0.0d0 ! ambient turbidity level, {turb}, (g/l)
turb_crit == 0.1d0 ! critical turbidity value (g/l)
turb_slop == 0.5d0 ! turbidity linear slope, {m}, (1/(g/l))
turb_axis == 1.0d0 ! turbidity linear axis crossing {c}
turb_base == 0.375d0 ! turbidity base factor, {b}, (g/l)
turb_rate == 0.5d0 ! turbidity rate, {beta}, (1/(g/l))
turb_mean == 2.0d0 ! turbidity mean, {turb0}, (g/l)
turb_size == 75.0d0 ! minimum larvae size (um) affected by tubidity
! Planktonic larvae vertical migration (swimming) parameters. It is
! assumed larvae swimming speeds are much smaller than horizontal
! currents, so only vertical migration is considered since vertical
! currents are relatively small in comparison. Following Dekshenieks
! et al. (1997) the vertical migration and behavior is defined as:
!
! w_bio = TS * SW - (1 - TS) * SR
!
! where TS = c * DS + d, for increasing salinity gradient DS
! TS = -e * DS + f, for decreasing salinity gradient DS
!
! TS: fraction of active larvae: fractional swimming time
! SW: larval swimming rate (mm/s)
! SR: larval sinking rate (mm/s)
! DS: salinity change rate (1/s)
!
swim_Tmin == 0.64d0 ! minimum swimming time fraction
swim_Tmax == 0.83d0 ! maximum swimming time fraction
swim_Sinc == 0.3801d0 ! fraction active {d} due to increasing salinity
swim_Sdec == 0.7515d0 ! fraction active {f} due to decreasing salinity
slope_Sinc == 0.0622d0 ! coefficient {c} due to increasing salinity
slope_Sdec == 0.0668d0 ! coefficient {d} due to decreasing salinity
! Planktonic larvae sinking parameters. Following Dekshenieks et al.
! (1997), the larval sinking rate (mm/s), as a function of larval
! size (um), is defined as:
!
! SR = sink_base * EXP(sink_rate*(Lsize-sink_size))
!
sink_base == 2.665d0 ! larval sinking exponential factor (mm/s)
sink_rate == 0.0058d0 ! sinking exponential rate factor (1/um)
sink_size == 220.0d0 ! larval size (um) for mean exponential sinking
! Planktonic larvae swimming speed (mm/s) as a function of larval size (um)
! and temperature (Celsius), look table (Dekshenieks et al., 1996;
! oyster larvae).
swim_Im = 58 ! number of values in larval size I-axix
swim_Jm = 24 ! number of values in temperature J-axis
swim_L0 = 55.0d0 ! starting value for temperature I-axis
swim_T0 = 12.0d0 ! starting value for larval size J-axis
swim_DL = 5.0d0 ! larval size J-axis increment
swim_DT = 1.0d0 ! temperature I-axis increment
swim_table = larval swimming speed look table, swim_table(58,24)
0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
0.00 0.01 0.03 0.04 0.06 0.07 0.07 0.08 0.08 0.09 0.09 0.10 0.10 0.09 0.09 0.09 0.09 0.09 0.08 0.08 0.08 0.08 0.09 0.09 0.09 0.09 0.09 0.10 0.10 0.10 0.10 0.11 0.11 0.11 0.12 0.12 0.13 0.14 0.14 0.15 0.16 0.16 0.17 0.18 0.19 0.19 0.20 0.21 0.21 0.22 0.22 0.22 0.22 0.22 0.22 0.22 0.22 0.22
0.00 0.03 0.06 0.09 0.12 0.13 0.14 0.15 0.17 0.18 0.19 0.20 0.20 0.19 0.19 0.19 0.18 0.18 0.17 0.17 0.17 0.18 0.18 0.18 0.19 0.19 0.19 0.20 0.20 0.21 0.21 0.21 0.22 0.22 0.23 0.25 0.26 0.28 0.29 0.30 0.32 0.33 0.34 0.36 0.37 0.38 0.40 0.41 0.43 0.44 0.44 0.44 0.44 0.44 0.44 0.44 0.44 0.44
0.00 0.05 0.09 0.14 0.18 0.20 0.21 0.23 0.25 0.27 0.28 0.30 0.29 0.29 0.28 0.28 0.27 0.26 0.26 0.25 0.26 0.26 0.27 0.27 0.28 0.28 0.29 0.30 0.30 0.31 0.31 0.32 0.32 0.33 0.35 0.37 0.39 0.41 0.43 0.45 0.47 0.50 0.52 0.54 0.56 0.58 0.60 0.62 0.64 0.66 0.66 0.66 0.66 0.66 0.66 0.66 0.66 0.66
0.00 0.05 0.09 0.14 0.19 0.21 0.22 0.24 0.26 0.28 0.29 0.31 0.31 0.30 0.30 0.29 0.28 0.28 0.28 0.27 0.28 0.28 0.29 0.30 0.30 0.31 0.31 0.32 0.33 0.33 0.34 0.35 0.35 0.36 0.38 0.40 0.42 0.44 0.46 0.48 0.50 0.52 0.55 0.57 0.59 0.61 0.63 0.65 0.67 0.69 0.69 0.69 0.69 0.69 0.69 0.69 0.69 0.69
0.00 0.05 0.09 0.14 0.19 0.21 0.22 0.24 0.26 0.28 0.29 0.31 0.31 0.31 0.30 0.30 0.30 0.29 0.29 0.29 0.30 0.31 0.31 0.32 0.33 0.34 0.34 0.35 0.36 0.37 0.38 0.38 0.39 0.40 0.42 0.44 0.46 0.48 0.50 0.52 0.54 0.56 0.59 0.61 0.63 0.65 0.67 0.69 0.71 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73
0.00 0.05 0.10 0.15 0.20 0.22 0.23 0.25 0.27 0.29 0.30 0.32 0.32 0.32 0.32 0.31 0.31 0.31 0.31 0.31 0.32 0.33 0.34 0.34 0.35 0.36 0.37 0.38 0.39 0.40 0.40 0.41 0.42 0.43 0.45 0.47 0.49 0.51 0.53 0.55 0.57 0.60 0.62 0.64 0.66 0.68 0.70 0.72 0.74 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.76
0.00 0.05 0.10 0.16 0.21 0.23 0.24 0.26 0.27 0.29 0.30 0.32 0.32 0.32 0.32 0.32 0.33 0.33 0.33 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.49 0.51 0.53 0.55 0.57 0.59 0.61 0.63 0.66 0.68 0.70 0.72 0.74 0.76 0.78 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80
0.00 0.05 0.11 0.16 0.22 0.24 0.25 0.27 0.28 0.30 0.31 0.33 0.33 0.34 0.34 0.34 0.34 0.34 0.35 0.35 0.36 0.37 0.38 0.39 0.40 0.41 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50 0.52 0.54 0.56 0.58 0.60 0.62 0.64 0.66 0.69 0.71 0.73 0.75 0.77 0.79 0.81 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83
0.00 0.06 0.12 0.18 0.24 0.27 0.29 0.32 0.35 0.38 0.40 0.43 0.43 0.44 0.44 0.44 0.44 0.44 0.45 0.45 0.46 0.46 0.47 0.47 0.48 0.48 0.49 0.50 0.50 0.51 0.51 0.52 0.52 0.53 0.55 0.57 0.59 0.61 0.63 0.65 0.67 0.69 0.72 0.74 0.76 0.78 0.80 0.82 0.84 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86
0.00 0.06 0.13 0.19 0.26 0.30 0.34 0.38 0.41 0.45 0.49 0.53 0.53 0.53 0.53 0.53 0.54 0.54 0.54 0.54 0.54 0.54 0.54 0.55 0.55 0.55 0.55 0.55 0.55 0.55 0.56 0.56 0.56 0.56 0.58 0.60 0.62 0.64 0.67 0.69 0.71 0.73 0.75 0.77 0.79 0.81 0.84 0.86 0.88 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90
0.00 0.07 0.14 0.21 0.28 0.33 0.38 0.43 0.48 0.53 0.58 0.63 0.63 0.63 0.63 0.63 0.64 0.64 0.64 0.64 0.64 0.63 0.63 0.63 0.63 0.62 0.62 0.62 0.61 0.61 0.61 0.61 0.60 0.60 0.62 0.64 0.66 0.68 0.70 0.72 0.74 0.76 0.79 0.81 0.83 0.85 0.87 0.89 0.91 0.93 0.93 0.93 0.93 0.93 0.93 0.93 0.93 0.93
0.00 0.08 0.16 0.23 0.31 0.37 0.43 0.49 0.55 0.61 0.67 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.72 0.72 0.71 0.70 0.69 0.69 0.68 0.67 0.67 0.66 0.65 0.64 0.64 0.63 0.65 0.67 0.69 0.72 0.74 0.76 0.78 0.80 0.82 0.84 0.86 0.88 0.91 0.93 0.95 0.97 0.97 0.97 0.97 0.97 0.97 0.97 0.97 0.97
0.00 0.08 0.17 0.25 0.33 0.40 0.47 0.54 0.62 0.69 0.76 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.82 0.81 0.79 0.78 0.77 0.76 0.75 0.73 0.72 0.71 0.70 0.68 0.67 0.66 0.68 0.70 0.72 0.75 0.77 0.79 0.81 0.83 0.85 0.87 0.89 0.92 0.94 0.96 0.98 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00
0.00 0.09 0.18 0.27 0.36 0.43 0.51 0.59 0.67 0.75 0.83 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.89 0.88 0.86 0.85 0.84 0.83 0.81 0.79 0.78 0.77 0.76 0.74 0.73 0.72 0.74 0.76 0.78 0.81 0.84 0.86 0.88 0.90 0.92 0.94 0.97 1.00 1.02 1.04 1.06 1.09 1.09 1.09 1.09 1.09 1.09 1.09 1.09 1.09
0.00 0.10 0.19 0.29 0.39 0.47 0.55 0.64 0.73 0.81 0.90 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.97 0.96 0.93 0.92 0.91 0.90 0.88 0.86 0.85 0.84 0.83 0.80 0.79 0.78 0.80 0.83 0.85 0.88 0.91 0.93 0.96 0.98 1.00 1.03 1.05 1.09 1.11 1.13 1.16 1.18 1.18 1.18 1.18 1.18 1.18 1.18 1.18 1.18
0.00 0.10 0.21 0.31 0.42 0.51 0.60 0.69 0.79 0.88 0.97 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.05 1.04 1.01 1.00 0.99 0.97 0.96 0.94 0.92 0.91 0.90 0.87 0.86 0.85 0.87 0.90 0.92 0.96 0.99 1.01 1.04 1.06 1.09 1.11 1.14 1.18 1.20 1.23 1.26 1.28 1.28 1.28 1.28 1.28 1.28 1.28 1.28 1.28
0.00 0.12 0.23 0.34 0.46 0.56 0.65 0.75 0.86 0.96 1.06 1.15 1.15 1.15 1.15 1.15 1.15 1.15 1.15 1.15 1.14 1.13 1.10 1.09 1.07 1.06 1.04 1.02 1.00 0.99 0.97 0.95 0.93 0.92 0.95 0.97 1.00 1.04 1.07 1.10 1.13 1.15 1.18 1.21 1.24 1.28 1.31 1.34 1.36 1.39 1.39 1.39 1.39 1.39 1.39 1.39 1.39 1.39
0.00 0.12 0.25 0.38 0.50 0.60 0.71 0.82 0.94 1.04 1.15 1.25 1.25 1.25 1.25 1.25 1.25 1.25 1.25 1.25 1.24 1.22 1.19 1.18 1.16 1.15 1.13 1.10 1.09 1.07 1.06 1.03 1.01 1.00 1.03 1.06 1.09 1.13 1.16 1.19 1.22 1.25 1.28 1.31 1.35 1.39 1.42 1.45 1.48 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51
0.00 0.14 0.27 0.41 0.54 0.66 0.77 0.89 1.02 1.13 1.25 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.35 1.33 1.30 1.28 1.26 1.25 1.23 1.20 1.18 1.17 1.15 1.12 1.10 1.08 1.12 1.15 1.18 1.23 1.26 1.30 1.33 1.36 1.40 1.43 1.46 1.51 1.54 1.58 1.61 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64
0.00 0.15 0.29 0.44 0.59 0.71 0.84 0.96 1.11 1.23 1.35 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.46 1.44 1.41 1.39 1.37 1.35 1.34 1.30 1.28 1.27 1.25 1.21 1.19 1.18 1.21 1.25 1.28 1.34 1.37 1.41 1.44 1.48 1.52 1.55 1.59 1.64 1.68 1.71 1.75 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78
0.00 0.16 0.32 0.48 0.64 0.77 0.91 1.05 1.20 1.34 1.47 1.61 1.61 1.61 1.61 1.61 1.61 1.61 1.61 1.61 1.59 1.57 1.53 1.51 1.49 1.47 1.45 1.41 1.39 1.37 1.36 1.32 1.30 1.28 1.32 1.36 1.39 1.45 1.49 1.53 1.57 1.61 1.65 1.68 1.72 1.78 1.82 1.86 1.90 1.94 1.94 1.94 1.94 1.94 1.94 1.94 1.94 1.94
0.00 0.17 0.34 0.52 0.69 0.84 0.99 1.14 1.30 1.45 1.60 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.72 1.70 1.66 1.64 1.62 1.60 1.58 1.54 1.51 1.49 1.47 1.43 1.41 1.39 1.43 1.47 1.51 1.58 1.62 1.66 1.70 1.75 1.79 1.83 1.87 1.93 1.98 2.02 2.06 2.10 2.10 2.10 2.10 2.10 2.10 2.10 2.10 2.10
0.00 0.19 0.38 0.56 0.75 0.91 1.07 1.23 1.42 1.58 1.74 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.87 1.85 1.80 1.78 1.76 1.74 1.71 1.67 1.64 1.62 1.60 1.55 1.53 1.51 1.55 1.60 1.64 1.71 1.76 1.80 1.85 1.90 1.94 1.99 2.03 2.10 2.15 2.19 2.24 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28
! Planktonic larvae growth rate factor (nondimensional) as
! a function salinity and temperature, look table
! (Dekshenieks et al., 1996, 1997; oyster larvae).
Gfactor_Im = 15 ! number of values in salinity I-axis
Gfactor_Jm = 24 ! number of values in temperature J-axis
Gfactor_S0 = 0.0d0 ! starting value for salinity I-axis
Gfactor_T0 = 12.0d0 ! starting value for temperature J-axis
Gfactor_DS = 2.5d0 ! salinity I-axis increment
Gfactor_DT = 1.0d0 ! temperature J-axis increment
Gfactor_table = larval growth rate factor look table, Gfactor(15,24)
0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
0.00 0.00 0.00 0.16 0.16 0.17 0.18 0.19 0.19 0.19 0.19 0.18 0.18 0.18 0.18
0.00 0.00 0.00 0.31 0.33 0.35 0.37 0.37 0.39 0.39 0.37 0.37 0.37 0.37 0.37
0.00 0.00 0.00 0.47 0.49 0.52 0.55 0.56 0.58 0.58 0.56 0.55 0.55 0.55 0.55
0.00 0.00 0.00 0.48 0.51 0.55 0.59 0.60 0.61 0.61 0.59 0.59 0.59 0.59 0.59
0.00 0.00 0.00 0.48 0.53 0.57 0.62 0.63 0.64 0.63 0.62 0.62 0.62 0.62 0.62
0.00 0.00 0.00 0.49 0.55 0.60 0.66 0.68 0.69 0.68 0.67 0.67 0.67 0.67 0.67
0.00 0.00 0.00 0.49 0.57 0.63 0.70 0.72 0.73 0.73 0.72 0.72 0.72 0.72 0.72
0.00 0.00 0.00 0.49 0.59 0.65 0.75 0.77 0.78 0.77 0.77 0.77 0.77 0.77 0.77
0.00 0.00 0.00 0.49 0.61 0.68 0.79 0.81 0.83 0.82 0.81 0.82 0.82 0.82 0.82
0.00 0.00 0.00 0.49 0.63 0.70 0.83 0.86 0.87 0.87 0.86 0.87 0.87 0.87 0.87
0.00 0.00 0.00 0.49 0.65 0.73 0.87 0.90 0.92 0.92 0.91 0.92 0.92 0.92 0.92
0.00 0.00 0.00 0.49 0.67 0.76 0.91 0.95 0.97 0.96 0.95 0.97 0.97 0.97 0.97
0.00 0.00 0.00 0.49 0.69 0.78 0.95 0.99 1.01 1.01 1.00 1.02 1.02 1.02 1.02
0.00 0.00 0.00 0.49 0.71 0.81 0.99 1.04 1.06 1.06 1.05 1.07 1.07 1.07 1.07
0.00 0.00 0.00 0.49 0.73 0.83 1.04 1.08 1.11 1.10 1.09 1.11 1.11 1.11 1.11
0.00 0.00 0.00 0.49 0.75 0.86 1.08 1.13 1.15 1.15 1.14 1.16 1.16 1.16 1.16
0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21
0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21
0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21
0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21
! Planktonic larvae growth rate (um/day) as a function of food supply (mg Carbon/l)
! and larval size (um), look table (Dekshenieks et al., 1996, 1997;
! oyster larvae).
Grate_Im = 31 ! number of values in food supply I-axis
Grate_Jm = 52 ! number of values in larval size J-axis
Grate_F0 = 0.0d0 ! starting value for food supply I-axis
Grate_L0 = 75.0d0 ! starting value for larval size J-axis
Grate_DF = 0.2d0 ! food supply I-axis increment
Grate_DL = 5.0d0 ! larval size J-axis increment
Grate_table = larval growth rate look table, Grate(31,52)
0.95 3.28 5.71 7.31 7.56 7.45 7.11 6.75 6.45 6.27 6.09 5.24 4.21 3.44 2.92 2.41 1.89 1.37 0.85 0.52 0.46 0.40 0.34 0.28 0.22 0.16 0.10 0.04 0.00 0.00 0.00
0.02 2.51 4.99 6.30 6.28 7.03 7.71 8.37 8.60 8.02 7.44 7.08 6.78 6.40 5.95 5.51 5.07 4.62 4.18 3.74 3.30 2.87 2.44 2.01 1.56 1.13 0.70 0.27 0.00 0.00 0.00
0.00 2.36 4.71 6.12 6.46 7.44 8.68 9.94 10.48 10.17 9.85 9.68 9.55 9.37 9.14 8.93 8.57 8.16 7.74 7.32 6.90 6.49 6.07 5.66 5.24 4.82 4.41 3.99 3.71 3.65 3.59
0.00 2.22 4.44 5.95 6.67 7.87 9.66 11.51 12.36 12.31 12.27 12.29 12.33 12.34 12.34 12.35 12.08 11.69 11.30 10.91 10.52 10.13 9.74 9.35 8.96 8.56 8.18 7.79 7.50 7.38 7.25
0.00 2.08 4.17 5.79 6.88 8.30 10.64 13.08 14.24 14.46 14.69 14.90 15.11 15.31 15.54 15.77 15.59 15.23 14.86 14.50 14.14 13.77 13.41 13.04 12.68 12.31 11.95 11.59 11.29 11.11 10.91
0.00 1.95 3.90 5.62 7.09 8.73 11.62 14.65 16.11 16.61 17.12 17.52 17.89 18.29 18.74 19.20 19.10 18.77 18.42 18.09 17.75 17.41 17.08 16.73 16.40 16.05 15.72 15.39 15.08 14.83 14.57
0.00 1.81 3.63 5.44 7.25 9.07 12.44 15.99 17.72 18.49 19.27 19.86 20.42 21.01 21.67 22.34 22.32 22.02 21.70 21.39 21.09 20.77 20.46 20.15 19.84 19.53 19.22 18.91 18.61 18.30 17.98
0.00 1.69 3.38 5.07 6.75 8.45 11.45 14.60 16.28 17.24 18.21 19.11 19.99 20.83 21.52 22.22 22.24 21.98 21.71 21.44 21.18 20.91 20.65 20.38 20.11 19.84 19.58 19.32 19.05 18.79 18.51
0.00 1.56 3.13 4.69 6.25 7.82 10.46 13.22 14.84 15.99 17.16 18.35 19.56 20.65 21.37 22.09 22.15 21.94 21.71 21.49 21.28 21.05 20.83 20.61 20.39 20.16 19.94 19.72 19.50 19.28 19.05
0.00 1.44 2.88 4.32 5.75 7.20 9.47 11.83 13.40 14.75 16.10 17.60 19.13 20.47 21.22 21.97 22.07 21.90 21.72 21.54 21.37 21.19 21.01 20.84 20.66 20.48 20.30 20.13 19.95 19.77 19.58
0.00 1.31 2.63 3.94 5.26 6.58 8.48 10.44 11.95 13.50 15.05 16.84 18.70 20.29 21.06 21.85 21.98 21.86 21.73 21.59 21.46 21.33 21.20 21.07 20.93 20.80 20.67 20.53 20.40 20.26 20.11
0.00 1.19 2.38 3.57 4.76 5.95 7.49 9.06 10.51 12.25 14.00 16.09 18.27 20.11 20.91 21.72 21.90 21.82 21.73 21.64 21.56 21.47 21.38 21.29 21.20 21.12 21.03 20.94 20.84 20.75 20.64
0.00 1.06 2.13 3.20 4.26 5.33 6.50 7.67 9.07 11.00 12.94 15.34 17.84 19.93 20.76 21.60 21.82 21.78 21.74 21.69 21.65 21.61 21.56 21.52 21.48 21.44 21.39 21.34 21.29 21.23 21.18
0.11 1.12 2.13 3.14 4.15 5.17 6.17 7.18 8.52 10.44 12.36 14.74 17.23 19.31 20.18 21.06 21.30 21.29 21.28 21.26 21.26 21.22 21.16 21.11 21.05 21.00 20.94 20.89 20.83 20.77 20.71
0.29 1.30 2.31 3.31 4.32 5.33 6.33 7.34 8.61 10.37 12.13 14.26 16.48 18.37 19.29 20.20 20.47 20.48 20.49 20.49 20.51 20.45 20.34 20.23 20.12 20.02 19.91 19.82 19.72 19.61 19.51
0.48 1.48 2.49 3.49 4.49 5.49 6.50 7.50 8.71 10.30 11.89 13.77 15.73 17.43 18.39 19.35 19.65 19.67 19.69 19.73 19.76 19.68 19.52 19.36 19.19 19.04 18.88 18.74 18.60 18.46 18.31
0.66 1.66 2.67 3.66 4.66 5.66 6.66 7.66 8.81 10.23 11.65 13.29 14.98 16.49 17.50 18.50 18.82 18.86 18.90 18.96 19.01 18.91 18.70 18.48 18.26 18.05 17.85 17.67 17.48 17.30 17.12
0.85 1.84 2.84 3.83 4.83 5.82 6.82 7.81 8.90 10.15 11.41 12.80 14.23 15.55 16.60 17.64 17.99 18.04 18.11 18.19 18.26 18.14 17.87 17.60 17.34 17.07 16.82 16.60 16.37 16.14 15.92
1.03 2.03 3.02 4.00 4.99 5.99 6.98 7.97 9.00 10.08 11.18 12.32 13.48 14.61 15.71 16.79 17.16 17.23 17.31 17.42 17.51 17.37 17.05 16.72 16.41 16.09 15.79 15.53 15.25 14.99 14.72
1.18 2.15 3.13 4.09 5.06 6.03 7.01 7.98 8.95 9.91 10.89 11.85 12.83 13.83 14.93 16.01 16.42 16.53 16.65 16.75 16.84 16.72 16.45 16.18 15.91 15.65 15.37 15.10 14.82 14.55 14.28
1.27 2.19 3.12 4.04 4.96 5.89 6.81 7.74 8.66 9.58 10.51 11.42 12.36 13.31 14.34 15.36 15.81 16.02 16.21 16.25 16.28 16.27 16.23 16.17 16.13 16.08 15.94 15.73 15.50 15.28 15.06
1.35 2.23 3.11 3.98 4.86 5.74 6.62 7.50 8.38 9.25 10.13 10.98 11.89 12.79 13.75 14.71 15.21 15.51 15.77 15.75 15.72 15.83 16.00 16.17 16.35 16.52 16.52 16.35 16.18 16.01 15.84
1.44 2.27 3.10 3.93 4.77 5.60 6.43 7.26 8.09 8.92 9.75 10.54 11.42 12.27 13.16 14.05 14.60 14.99 15.32 15.25 15.17 15.38 15.78 16.16 16.56 16.96 17.10 16.98 16.86 16.74 16.62
1.52 2.31 3.10 3.88 4.67 5.45 6.23 7.02 7.81 8.59 9.38 10.11 10.95 11.75 12.57 13.40 13.99 14.48 14.88 14.75 14.61 14.93 15.55 16.16 16.78 17.40 17.67 17.61 17.54 17.47 17.40
1.61 2.35 3.09 3.83 4.57 5.31 6.04 6.78 7.52 8.26 9.00 9.67 10.48 11.22 11.99 12.75 13.39 13.97 14.44 14.25 14.05 14.48 15.32 16.16 17.00 17.84 18.25 18.23 18.22 18.20 18.19
1.69 2.39 3.08 3.77 4.47 5.16 5.85 6.54 7.23 7.93 8.62 9.23 10.01 10.70 11.40 12.09 12.78 13.45 14.00 13.75 13.49 14.04 15.10 16.15 17.21 18.27 18.82 18.86 18.90 18.93 18.97
1.56 2.26 2.97 3.67 4.38 5.09 5.78 6.49 7.19 7.90 8.61 9.24 10.02 10.72 11.43 12.14 12.84 13.54 14.12 13.96 13.80 14.37 15.44 16.49 17.55 18.62 19.18 19.25 19.32 19.39 19.46
1.40 2.12 2.85 3.57 4.29 5.02 5.73 6.45 7.18 7.90 8.62 9.28 10.07 10.79 11.52 12.24 12.96 13.68 14.29 14.23 14.17 14.78 15.83 16.86 17.91 18.95 19.52 19.62 19.72 19.82 19.92
1.25 1.99 2.73 3.47 4.21 4.95 5.68 6.42 7.16 7.90 8.64 9.32 10.12 10.86 11.60 12.34 13.08 13.82 14.45 14.51 14.55 15.19 16.22 17.23 18.26 19.29 19.86 19.99 20.12 20.25 20.38
1.09 1.85 2.61 3.36 4.12 4.88 5.63 6.39 7.15 7.90 8.66 9.37 10.17 10.93 11.69 12.45 13.20 13.96 14.62 14.78 14.93 15.60 16.61 17.60 18.61 19.62 20.21 20.36 20.52 20.68 20.84
0.93 1.71 2.49 3.26 4.03 4.81 5.58 6.35 7.13 7.90 8.68 9.41 10.23 11.00 11.78 12.55 13.32 14.09 14.79 15.05 15.31 16.00 16.99 17.97 18.96 19.95 20.55 20.73 20.92 21.11 21.31
0.78 1.57 2.36 3.16 3.94 4.74 5.53 6.32 7.11 7.91 8.69 9.45 10.28 11.07 11.87 12.66 13.45 14.23 14.96 15.33 15.68 16.41 17.38 18.35 19.32 20.29 20.89 21.11 21.32 21.54 21.77
0.62 1.43 2.24 3.05 3.86 4.67 5.48 6.29 7.10 7.91 8.71 9.49 10.33 11.14 11.95 12.76 13.57 14.37 15.13 15.60 16.06 16.82 17.77 18.72 19.67 20.62 21.23 21.48 21.73 21.97 22.23
0.47 1.29 2.12 2.95 3.77 4.60 5.42 6.25 7.08 7.91 8.73 9.53 10.38 11.21 12.04 12.87 13.69 14.51 15.30 15.87 16.44 17.23 18.16 19.09 20.02 20.96 21.57 21.85 22.13 22.41 22.69
0.31 1.16 2.00 2.85 3.68 4.53 5.37 6.22 7.06 7.91 8.75 9.58 10.44 11.28 12.13 12.97 13.81 14.65 15.47 16.14 16.82 17.63 18.55 19.46 20.37 21.29 21.91 22.22 22.53 22.84 23.16
0.16 1.02 1.88 2.74 3.60 4.46 5.32 6.18 7.05 7.91 8.76 9.62 10.49 11.35 12.21 13.08 13.93 14.79 15.64 16.42 17.19 18.04 18.94 19.83 20.73 21.63 22.25 22.59 22.93 23.27 23.62
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08
!
! GLOSSARY:
! =========
!
!==============================================================================
! Biological floats behavior parameters based on the oyster model of
! Dekshenicks et al. (1993, 1996):
!
! d(Lsize)/d(t) = growth(food,Lsize) * Gfactor(T,S) * turb_ef
!
! w_bio = TS * SW - (1 - TS) * SR
!
! where
!
! turbef = m * trub + c, for turbidity < 0.1 g/l
! or
! turbef = b * EXP(-beta*(turb-turb0)), for turbidity > 0.1 g/l
!
! TS = c * DS + d, for increasing salinity gradient DS
! or
! TS = -e * DS + f, for decreasing salinity gradient DS
!
! SR = 2.665 * EXP(0.0058*(Lsize-220))
!
! Lsize: larval size in terms of length (um)
! TS: fraction of active larvae: fractional swimming time
! SW: larval swimming rate (mm/s)
! SR: larval sinking rate (mm/s)
! DS: salinity change rate (1/s)
! w_bio: larval vertica migration
!==============================================================================
!
! Initialization parameters:
!
! Larvae_size0 Initial planktonic larvae size in terms of length (um).
!
! Larvae_GR0 Initial planktonic larvae growth rate (um/day).
!
! settle_size Planktonic larvae settlement size (um).
!
! food_supply Initial food supply concentration (constant source).
!
!------------------------------------------------------------------------------
! Turbidity effect parameters on planktonic larvae growth (linear or
! exponential).
!------------------------------------------------------------------------------
!
! turb_ambi Ambient turbidity level, {turb}, (g/l)
!
! turb_crit Critical turbidity value (g/l)
!
! turb_slop Turbidity linear slope, {m}, (1/(g/l))
!
! turb_axis Turbidity linear axis crossing {c}
!
! turb_base Turbidity base factor, {b}
!
! turb_rate Turbidity rate, {beta}, (1/(g/l))
!
! turb_mean Turbidity mean, {turb0}, (g/l)
!
! turb_size Minimum larvae size (um) affected by tubidity
!
!------------------------------------------------------------------------------
! Planktonic larvae vertical migration (swimming) parameters.
!------------------------------------------------------------------------------
!
! It is assumed larvae swimming speeds are much smaller than horizontal
! currents, so only vertical migration is considered since vertical
! currents are relatively small in comparison.
!
! swim_Tmin Minimum swimming time fraction
!
! swim_Tmax Maximum swimming time fraction
!
! swim_Sinc Fraction active {d} due to increasing salinity
!
! swim_Sdec Fraction active {f} due to decreasing salinity
!
! slope_Sinc Coefficient {c} due to increasing salinity
!
! slope_Sdec Coefficient {e} due to decreasing salinity
!
!------------------------------------------------------------------------------
! Planktonic larvae sinking parameters: exponential sinking.
!------------------------------------------------------------------------------
!
! sink_base Larval sinking exponential factor (mm/s)
!
! sink_rate Sinking exponential rate factor (1/um)
!
! sink_size Larval size (um) for mean exponential sinking
!
!------------------------------------------------------------------------------
! Planktonic larvae swimming speed (mm/s) as a function of larval size (um)
! and temperature (Celsius): swim look table.
!------------------------------------------------------------------------------
!
! swim_Im Number of values in larval size I-axis
!
! swim_Jm Number of values in temperature J-axis
!
! swim_L0 Starting value for larval size (um) I-axis
!
! swim_T0 Starting value for temperature (Celsius) J-axis
!
! swim_DL Larval size (um) I-axis increment
!
! swim_DT Temperature (Celsius) J-axis increment
!
! swim_table Larval swimming speed look table
! swim_table(1:swim_Im, 1:swim_Jm)
!
!------------------------------------------------------------------------------
! Planktonic larvae growth rate factor (nondimensional) as a function salinity
! and temperature (Celsius) : Gfactor look table.
!------------------------------------------------------------------------------
!
! Gfactor_Im Number of values in salinity I-axis
!
! Gfactor_Jm Number of values in temperature (Celsius) J-axis
!
! Gfactor_S0 Starting value for salinity I-axis
!
! Gfactor_T0 Starting value for temperature (Celsius) J-axis
!
! Gfactor_DS Salinity I-axis increment
!
! Gfactor_DT Temperature J-axis increment
!
! Gfactor_table Larval growth rate factor look table
!
!------------------------------------------------------------------------------
! Planktonic larvae growth rate as a function of food supply (mg Carbon/l) and
! larval size (um), Grate look table.
!------------------------------------------------------------------------------
!
! Grate_Im Number of values in food supply I-axis
!
! Grate_Jm Number of values in larval size J-axis
!
! Grate_F0 Starting value for food supply (mg Carbon/l) I-axis
!
! Grate_L0 Starting value for larval size (um) J-axis
!
! Grate_DF Food supply (mg_Carbon/l) I-axis increment
!
! Grate_DL Larval size (mg) J-axis increment
!