\begin{thebibliography}{}

\bibitem[\protect\citename{Dietrich \& Lin, }2002]{Dietrich02}
Dietrich, D.~E., \& Lin, C.~A. 2002.
\newblock Effects of hydrostatic approximation and resolution on the simulation
  of convective adjustment.
\newblock {\em Tellus}, {\bf 54(A)}, 34--43.

\bibitem[\protect\citename{Dietrich {\em et~al.}, }1987]{Dietrich87}
Dietrich, D.~E., Marietta, M.~G., \& Roache, P.~J. 1987.
\newblock {An ocean modeling system with turbulent boundary layers and
  topography: Part 1. Numerical studies of small island wakes in the ocean}.
\newblock {\em Int. J. Numer. Methods Fluids}, {\bf 7}, 833--855.

\bibitem[\protect\citename{Dietrich {\em et~al.}, }1996]{Dietrich96}
Dietrich, D.~E., Bowman, M.~J., Lin, C.~A., \& Mestas-Nunez, A. 1996.
\newblock Numerical studies of small island wakes in the ocean.
\newblock {\em Geophys. Astrophys. Fluid Dyn.}, {\bf 83}, 195--231.

\bibitem[\protect\citename{Dietrich {\em et~al.}, }2004a]{Dietrich04b}
Dietrich, D.~E., Haney, R.~L., Fernandez, V., Josey, S., \& Tintore, J. 2004a.
\newblock Air-sea fluxes based on observed annual cycle surfce climatology and
  ocean model internal dynamics: {A} precise, non-damping zero-phase-lag
  approach applied to the {Mediterranean Sea}.
\newblock {\em J. Mar. Systems}, {\bf 52}, 145--165.

\bibitem[\protect\citename{Dietrich {\em et~al.}, }2004b]{Dietrich04a}
Dietrich, D.~E., Mehra, A., Haney, R.~L., Bowman, M.~J., \& Tseng, Y.~H. 2004b.
\newblock Dissipation effects in modeling the North Atlantic ocean.
\newblock {\em Geophys. Res. Lett.}, {\bf 31}, L05302.

\bibitem[\protect\citename{Ezer, }2004]{Ezer04b}
Ezer, T. 2004.
\newblock Entrainment, diapycnal mixing and transport in three-dimensional
  bottom gravity current simulations using the Mellor-Yamada turbulence scheme.
\newblock {\em Ocean Modelling},  in press.

\bibitem[\protect\citename{Ezer \& Mellor, }2004]{Ezer04a}
Ezer, T., \& Mellor, G.L. 2004.
\newblock A generalized coordinate ocean model and a comparison of the bottom
  boundary layer dynamics in terrain-following and in z-level grid.
\newblock {\em Ocean Modelling}, {\bf 6}, 379--403.

\bibitem[\protect\citename{Haney, }1971]{Haney71}
Haney, R.~L. 1971.
\newblock Surface thermal boundary condition for ocean circulation modes.
\newblock {\em J. Phys. Oceanogr.}, {\bf 1}, 241--248.

\bibitem[\protect\citename{Oliger \& Sundstrom, }1978]{Oliger78}
Oliger, J., \& Sundstrom, A. 1978.
\newblock Theoretical and practical aspects of some initial boundary value
  problems in fluid dynamics.
\newblock {\em SIAM J. Appl. Math.}, {\bf 35}, 419--446.

\bibitem[\protect\citename{Orlanski, }1976]{Orlanski76}
Orlanski, I. 1976.
\newblock A simple boundary condition for unbounded hyperbolic flows.
\newblock {\em J. Comput. Phys.}, {\bf 21}, 251--269.

\bibitem[\protect\citename{Pacanowski \& Philander, }1981]{Pacanowski81}
Pacanowski, R.~C., \& Philander, S. G.~H. 1981.
\newblock Parameterization of vertical mixing in numerical models of tropical
  ocean.
\newblock {\em J. Phys. Oceanogr.}, {\bf 11}, 1443--1451.

\bibitem[\protect\citename{Roache, }1995]{Roache95}
Roache, P.~J. 1995.
\newblock {\em Elliptic marching methods and domain decomposition}.
\newblock CRC Press.

\bibitem[\protect\citename{Sanderson \& Brassington, }1998]{Sanderson98b}
Sanderson, B.~G., \& Brassington, G. 1998.
\newblock Accuracy in the context of a control-volume model.
\newblock {\em Atmos.-Ocean}, {\bf 36}, 355--384.

\bibitem[\protect\citename{Sheng {\em et~al.}, }1998]{Sheng98}
Sheng, J.~Y., Wright, D.~G., Greatbatch, R.~J., \& Dietrich, D.~E. 1998.
\newblock {CANDIE: A new version of the DieCAST ocean circulation model}.
\newblock {\em J. Atmos. Oceanic Technol.}, {\bf 15}, 1414--1432.

\bibitem[\protect\citename{Tseng \& Dietrich, }2006]{Tseng06b}
Tseng, Y.~H., \& Dietrich, D.~E. 2006.
\newblock Entrainment and transport in idealized three-dimensional gravity
  current simulation.
\newblock {\em J. Atmos. Oceanic Technol.}, {\bf 23}, 1249--1269.

\bibitem[\protect\citename{Tseng \& Ferziger, }2003]{Tseng03}
Tseng, Y.~H., \& Ferziger, J.~H. 2003.
\newblock A ghost-cell immersed boundary method for flow in complex geometry.
\newblock {\em J. Comput. Phys.}, {\bf 192}, 593--623.

\bibitem[\protect\citename{Tseng {\em et~al.}, }2003]{Tseng03a}
Tseng, Y.~H., Dietrich, D.~E., \& Ferziger, J.~H. 2003.
\newblock Numerical simulation of regional circulation in the Monterey Bay
  region.
\newblock {\em Center for Turbulent Research, Stanford/Annual Research Brief},
  115--126.

\end{thebibliography}
